PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_140.14
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family SRS
Protein Properties Length: 303aa    MW: 33780.3 Da    PI: 7.2092
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_140.14genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.31.9e-68812362154
                        DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskr 74 
                                   r+g+++CqdCGnqakkdCah RCRtCCksrgf+C+th+kstWvpaakrrerqqq +a++++++ ++        +e+++kr
  evm.model.supercontig_140.14  81 RQGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCHTHLKSTWVPAAKRRERQQQFSALQNQNQDHQqqqqllqfREENPKR 161
                                   7899**************************************************999988887776556666555555555 PP

                        DUF702  75 krelkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                   +re+  + + +l+st+l+++   + le++++P+ev+s+a+frcvrvs+vdd +eelaYqtav+igGhvfkGiLydqG+e+
  evm.model.supercontig_140.14 162 QREN--QGACSLASTRLPTS---SGLEIENFPQEVNSTALFRCVRVSAVDDPDEELAYQTAVNIGGHVFKGILYDQGTES 236
                                   5554..55666666666655...57899*************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-6584235IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.0E-2686128IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.0E-26187233IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAGFFYLGGR EGGTSSKQEE DKEENNLYLY RSNEEIYNKG FEIWPEYYQQ NTSSFSFGVG  60
PSRRTSLGDD WSSRSGFTLM RQGGMNCQDC GNQAKKDCAH LRCRTCCKSR GFQCHTHLKS  120
TWVPAAKRRE RQQQFSALQN QNQDHQQQQQ LLQFREENPK RQRENQGACS LASTRLPTSS  180
GLEIENFPQE VNSTALFRCV RVSAVDDPDE ELAYQTAVNI GGHVFKGILY DQGTESRYNM  240
DHHHQHLNLI TASTTAATTT TTAAGAGTST NPAGTPLLDP SLFPAPLNAF IAGTQFFPPP  300
RS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017677.11e-138SHI-related sequence 7, putative
SwissprotQ9LQZ56e-95SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A061FDV11e-138A0A061FDV1_THECC; SHI-related sequence 7, putative
STRINGPOPTR_0002s03000.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-86SHI-related sequence 5